Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_2008KEGG: rba:RB12421 conserved hypothetical protein, putative adenylate cyclase regulatory protein. (248 aa)    
Predicted Functional Partners:
Acid_4826
KEGG: pcu:pc1032 hypothetical protein.
  
     0.735
Acid_6718
PFAM: GHMP kinase; KEGG: dre:569254 hypothetical protein LOC569254.
  
     0.716
Acid_2075
KEGG: rba:RB7871 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.653
Acid_6262
KEGG: ath:At2g35150 phosphate-responsive 1 family protein.
  
     0.594
Acid_6395
SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: bpm:BURPS1710b_A2573 hypothetical protein.
  
     0.579
Acid_6673
Deoxyribodipyrimidine photo-lyase type II; PFAM: DNA photolyase, FAD-binding; KEGG: rxy:Rxyl_0663 deoxyribodipyrimidine photolyase.
  
     0.533
Acid_4072
Inositol oxygenase; PFAM: Protein of unknown function DUF706; KEGG: cne:CNF03950 myo-inositol oxygenase.
  
     0.507
Acid_4606
KEGG: ath:At5g57700_1 expressed protein.
  
     0.505
Acid_3139
KEGG: aba:Acid345_2770 amino acid aldolase or racemase-like.
  
     0.467
Acid_3663
PFAM: Phytanoyl-CoA dioxygenase; KEGG: rba:RB7548 similar to syringomycin biosynthesis enzyme 2.
  
     0.458
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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