STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2009PFAM: TonB-dependent receptor; KEGG: aba:Acid345_3218 hypothetical protein. (1031 aa)    
Predicted Functional Partners:
Acid_1509
KEGG: aba:Acid345_3322 hypothetical protein.
  
     0.767
Acid_1280
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aba:Acid345_0148 TonB-like protein.
  
   0.743
Acid_2218
KEGG: aba:Acid345_3561 hypothetical protein.
  
     0.743
Acid_7026
KEGG: ccr:CC0925 OmpA-related protein.
  
     0.741
Acid_6470
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: aba:Acid345_0248 surface antigen (D15).
  
     0.681
Acid_3730
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_3344 von Willebrand factor, type A.
  
     0.672
Acid_4474
TIGRFAM: TonB family protein; KEGG: aba:Acid345_0148 TonB-like protein.
  
   0.670
Acid_5078
KEGG: aba:Acid345_4447 hypothetical protein.
  
   
 0.655
Acid_3383
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_2058 von Willebrand factor, type A.
  
     0.652
Acid_5910
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_2058 von Willebrand factor, type A.
  
     0.645
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.