STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2011Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. (221 aa)    
Predicted Functional Partners:
Acid_3780
PFAM: protein of unknown function DUF152; KEGG: cte:CT0026 conserved hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.
 
  
 0.870
Acid_1082
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
    0.783
Acid_2012
Hypothetical protein; KEGG: rba:RB9627 probable mannosyltransferase A (MtfA).
       0.775
Acid_2013
PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: lmo:lmo2755 similar to acylase and diesterase.
       0.773
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
    0.698
rpmC
PFAM: ribosomal protein L29; KEGG: gka:GK0114 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
   
    0.685
rplX
LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
    0.668
rpmJ
PFAM: ribosomal protein L36; KEGG: tde:TDE0788 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
  
    0.665
rlmN
Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
 
     0.608
Acid_2010
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_1545 TonB-dependent receptor.
       0.531
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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