close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2012Hypothetical protein; KEGG: rba:RB9627 probable mannosyltransferase A (MtfA). (396 aa)    
Predicted Functional Partners:
Acid_2011
Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.775
Acid_2013
PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: lmo:lmo2755 similar to acylase and diesterase.
       0.773
Acid_5620
Methyltransferase type 11; PFAM: Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: mac:MA1178 hypothetical protein.
  
     0.670
Acid_2010
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_1545 TonB-dependent receptor.
 
    0.642
Acid_5744
KEGG: rba:RB7502 hypothetical protein.
  
    0.634
Acid_0020
SMART: Tetratricopeptide domain protein; KEGG: gsu:GSU3191 TPR domain protein.
 
     0.583
Acid_4244
PFAM: glycosyl transferase, group 1; KEGG: psb:Psyr_0936 glycosyl transferase, group 1.
 
     0.564
Acid_7732
DNA topoisomerase III; KEGG: cac:CAC3567 topoisomerase B; TIGRFAM: ATP-dependent DNA helicase, RecQ family; DNA topoisomerase III; PFAM: helicase domain protein; HRDC domain protein; TOPRIM domain protein; DEAD/DEAH box helicase domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein; DEAD-like helicases-like.
    
 
 0.551
Acid_6231
PFAM: glycosyl transferase, group 1; KEGG: mhu:Mhun_2129 glycosyl transferase, group 1.
 
     0.543
Acid_1392
SMART: AAA ATPase; KEGG: syf:Synpcc7942_1244 ATPase.
 
 
 0.525
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.