Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_2102KEGG: aba:Acid345_0489 alpha/beta hydrolase. (365 aa)    
Predicted Functional Partners:
Acid_5018
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: dps:DP2209 probable NADH dehydrogenase (ubiquinone) I, chain F.
    
  0.948
Acid_2101
KEGG: hch:HCH_00933 TRAP-type uncharacterized transport system, periplasmic component.
       0.762
Acid_7580
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
   0.753
Acid_2103
PFAM: putative esterase; glycoside hydrolase, family 13 domain protein; KEGG: aba:Acid345_3245 putative esterase.
       0.746
Acid_4275
KEGG: rba:RB4014 probable acetyl xylan esterase.
      
 0.618
Acid_1972
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; 2-nitropropane dioxygenase, NPD; KR; KEGG: fra:Francci3_0926 beta-ketoacyl synthase.
  
 0.534
Acid_0211
KEGG: pha:PSHAa1861 hypothetical protein.
  
 
   0.527
Acid_3639
PFAM: TonB-dependent receptor; Cna B domain protein; TonB-dependent receptor, plug; KEGG: zmo:ZMO1807 TonB-dependent receptor.
  
     0.515
Acid_1787
PFAM: PGAP1 family protein; KEGG: aba:Acid345_0349 hypothetical protein.
 
   
 0.496
Acid_1798
KEGG: rpc:RPC_4419 hypothetical protein.
  
  0.489
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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