Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_2115Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: bja:blr5192 hypothetical protein. (225 aa)    
Predicted Functional Partners:
Acid_5151
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; regulatory protein, DeoR; iron dependent repressor; UbiC transcription regulator-associated domain protein; KEGG: gka:GK2275 transcriptional regulator (GntR family).
  
  
 0.764
Acid_0108
TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: gme:Gmet_2933 ThiS, thiamine-biosynthesis.
  
 
  0.635
Acid_2117
PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B1871 major facilitator superfamily (MFS_1) transporter.
     
 0.577
Acid_2118
PFAM: glycosyl transferase, group 1; KEGG: gme:Gmet_2000 glycosyl transferase, group 1.
     
 0.576
Acid_2116
KEGG: ddi:DDB0205771 hypothetical protein.
       0.574
Acid_2114
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: aba:Acid345_2693 sigma-24, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.562
cobB
PFAM: Silent information regulator protein Sir2; KEGG: aae:aq_2170 hypothetical protein; Belongs to the sirtuin family. Class III subfamily.
  
    0.537
Acid_4447
Peptidase C26; PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: oih:OB0725 hypothetical protein.
  
  
 0.510
Acid_0755
PFAM: UBA/THIF-type NAD/FAD binding protein; Rhodanese domain protein; MoeZ/MoeB domain protein; KEGG: gvi:gll3412 molybdopterin biosynthesis MoeB protein homolog.
  
 
 0.507
Acid_2068
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; periplasmic binding protein/LacI transcriptional regulator; KEGG: lla:L0146 transcription regulator.
  
  
 0.495
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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