Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_2116KEGG: ddi:DDB0205771 hypothetical protein. (554 aa)    
Predicted Functional Partners:
Acid_2117
PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B1871 major facilitator superfamily (MFS_1) transporter.
       0.776
Acid_2118
PFAM: glycosyl transferase, group 1; KEGG: gme:Gmet_2000 glycosyl transferase, group 1.
       0.776
Acid_2115
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: bja:blr5192 hypothetical protein.
       0.574
Acid_2114
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: aba:Acid345_2693 sigma-24, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
       0.422
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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