Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_2124PFAM: amino acid permease-associated region; KEGG: aba:Acid345_3835 amino acid transporter. (462 aa)    
Predicted Functional Partners:
Acid_2125
PFAM: glycosyl transferase, family 2; Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT0443 glycosyl transferase.
   
  0.798
Acid_2123
PFAM: glycoside hydrolase 15-related; KEGG: glycosyl hydrolase, family 15.
       0.773
Acid_2126
Hypothetical protein.
       0.773
Acid_2127
PFAM: glycosyl hydrolase, BNR repeat-containing protein; KEGG: sma:SAV1686 oxidoreductase.
       0.773
Acid_2130
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bur:Bcep18194_B1620 lipolytic enzyme.
    
  0.664
Acid_2129
TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: tvo:TVN0424 intracellular protease.
   
   0.642
Acid_2128
Hypothetical protein.
       0.639
Acid_2070
KEGG: atc:AGR_pTi_251 sucrose phosphorylase SplA; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
  
 0.496
Acid_2122
PFAM: PfkB domain protein; KEGG: mta:Moth_0419 PfkB.
   
 
 0.479
Acid_2121
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: mta:Moth_0912 serine/threonine protein kinase.
       0.411
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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