Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Acid_2133PFAM: membrane-flanked domain; KEGG: hma:rrnAC0955 hypothetical protein. (153 aa)    
Predicted Functional Partners:
Acid_2131
PFAM: protein of unknown function UPF0066; KEGG: pca:Pcar_2088 hypothetical protein.
       0.773
Acid_2132
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: aba:Acid345_0265 3-oxoacyl-(acyl-carrier-protein) reductase.
       0.773
Acid_7871
TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: ath:At1g73990 peptidase U7 family protein.
 
    0.689
Acid_2134
Hypothetical protein.
       0.552
Acid_5401
PFAM: GCN5-related N-acetyltransferase; KEGG: lic:LIC12666 acetyltransferase.
  
     0.519
Acid_5569
PFAM: cobalamin synthesis protein, P47K; KEGG: bca:BCE_A0164 cobalamin synthesis protein/P47K family protein.
  
    0.400
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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