Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_2137KEGG: mlo:mll0636 outer membrane protein. (414 aa)    
Predicted Functional Partners:
Acid_3192
KEGG: aba:Acid345_0073 DNA uptake lipoprotein-like.
  
 0.926
Acid_4533
PFAM: Pyrrolo-quinoline quinone; KEGG: aba:Acid345_4167 pyrrolo-quinoline quinone.
  
 0.838
Acid_7818
SMART: Pyrrolo-quinoline quinone; KEGG: aba:Acid345_1484 hypothetical protein.
  
 0.838
Acid_1720
KEGG: aba:Acid345_2357 hypothetical protein.
  
 
 
 0.753
Acid_3947
PFAM: protein of unknown function DUF490; KEGG: aba:Acid345_2474 protein of unknown function DUF490.
    
 0.728
Acid_0746
PFAM: protein of unknown function DUF490; KEGG: aba:Acid345_2474 protein of unknown function DUF490.
    
 0.683
Acid_3912
PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: mxa:MXAN_7110 peptidyl-prolyl cis-trans isomerase, FKBP-type.
   
 
 0.683
Acid_4147
PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: syf:Synpcc7942_2354 peptidylprolyl isomerase.
   
 
 0.683
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
  
    0.656
Acid_5169
PFAM: peptidase M50; KEGG: aba:Acid345_1182 peptidase M50.
  
  
 0.649
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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