Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Acid_2146KEGG: rba:RB9948 hypothetical protein. (166 aa)    
Predicted Functional Partners:
Acid_2147
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: mlo:mll1867 probable RNA polymerase sigma subunit; Belongs to the sigma-70 factor family. ECF subfamily.
       0.727
Acid_2148
PFAM: peptidase M16 domain protein; KEGG: mxa:MXAN_0791 peptidase, M16 (pitrilysin) family.
       0.521
Acid_2149
PFAM: peptidase M16 domain protein; KEGG: sdn:Sden_3485 peptidase M16-like protein.
       0.521
Acid_2145
Hypothetical protein.
       0.440
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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