Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_2154PFAM: metallophosphoesterase; KEGG: rba:RB5263 hypothetical protein. (269 aa)    
Predicted Functional Partners:
Acid_2155
KEGG: bha:BH0186 hypothetical protein.
       0.773
Acid_2156
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sma:SAV3658 3-oxoacyl-ACP reductase.
       0.773
Acid_3791
PFAM: Collagen triple helix repeat; KEGG: gga:395488 macrophage receptor with collagenous structure.
  
     0.717
Acid_6398
PFAM: HNH endonuclease; KEGG: RGD1564952_predicted, LOC304761; similar to zinc finger, RAN-binding domain containing 3 (predicted).
  
     0.687
Acid_3161
PFAM: acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase; KEGG: rso:RSc1887 putative acyl coenzyme A thioester hydrolase protein.
  
     0.644
Acid_0876
LOC465997; KEGG: ptr:465997 LOC465997.
  
     0.518
Acid_6274
KEGG: sco:SCO6735 hypothetical protein.
  
     0.473
Acid_3792
Hypothetical protein; KEGG: ptr:460347 alpha 1 type VII collagen.
  
     0.468
Acid_1224
PFAM: peptidase M10A and M12B, matrixin and adamalysin; SMART: peptidase, metallopeptidases; KEGG: mmu:240047 matrix metallopeptidase 25.
  
     0.455
Acid_4958
PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: ade:Adeh_0386 peptidase S1 and S6, chymotrypsin/Hap.
 
 
   0.455
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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