Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Acid_2166PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: efa:EF3277 cytosine permease, putative. (447 aa)    
Predicted Functional Partners:
pyrB
KEGG: pca:Pcar_1615 aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
   
    0.782
carA
TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; KEGG: aba:Acid345_2194 carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.
   
    0.774
carB
TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: aba:Acid345_2197 carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.
   
  
 0.771
Acid_1122
Dipeptidyl aminopeptidases/acylaminoacyl-peptidase-like protein; KEGG: eca:ECA3785 hypothetical protein.
  
     0.678
Acid_5124
KEGG: nfa:nfa18690 hypothetical protein.
  
     0.606
Acid_6268
Hypothetical protein.
  
     0.597
Acid_1070
PFAM: ROK family protein; KEGG: pai:PAE3437 glucokinase (ROK family protein), conjectural.
  
     0.586
Acid_2120
Alpha-N-arabinofuranosidase; KEGG: afm:Afu6g14620 alpha-L-arabinofuranosidase.
  
     0.581
Acid_6139
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB12844 hypothetical protein.
  
     0.581
Acid_5225
KEGG: ade:Adeh_3195 hypothetical protein.
  
     0.579
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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