Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_2175PFAM: oxidoreductase domain protein; KEGG: jan:Jann_1467 oxidoreductase-like. (362 aa)    
Predicted Functional Partners:
Acid_2176
KEGG: aba:Acid345_3332 hypothetical protein.
 
     0.729
Acid_2174
KEGG: ana:all0424 unknown protein.
  
    0.676
Acid_0576
PFAM: oxidoreductase domain protein; KEGG: aba:Acid345_2325 oxidoreductase.
  
     0.643
Acid_4406
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aba:Acid345_4312 sugar phosphate isomerases/epimerases.
  
    0.640
Acid_3245
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tte:TTE1949 sugar phosphate isomerase/epimerase.
  
    0.626
Acid_7024
PFAM: NIPSNAP family containing protein; KEGG: rba:RB7235 hypothetical protein-signal peptide prediction.
  
     0.611
Acid_7509
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aba:Acid345_1695 sugar phosphate isomerases/epimerases.
  
    0.596
Acid_2691
PFAM: oxidoreductase domain protein; KEGG: aba:Acid345_2325 oxidoreductase.
  
     0.593
Acid_3246
PFAM: oxidoreductase domain protein; KEGG: rba:RB2833 conserved hypothetical protein, putative NADH-dependent dyhydrogenase.
  
     0.585
Acid_2550
PFAM: oxidoreductase domain protein; KEGG: rba:RB1939 probable oxidoreductase.
  
     0.578
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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