Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_2178PFAM: iron dependent repressor; FeoA family protein; KEGG: sco:SCO4394 iron repressor. (218 aa)    
Predicted Functional Partners:
Acid_0827
PFAM: ABC-3 protein; KEGG: aae:aq_2165 putative manganese transport system permease protein.
  
 
 0.850
Acid_5791
KEGG: mfa:Mfla_2613 hypothetical protein.
  
 
 0.850
Acid_6715
PFAM: cobalt transport protein; KEGG: gsu:GSU1280 cobalt ABC transporter, permease protein.
 
  
 0.816
Acid_5821
PFAM: permease YjgP/YjgQ family protein; KEGG: aba:Acid345_1515 transporter, YjgP/YjgQ family.
 
  
  0.806
Acid_6714
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: ava:Ava_1755 cobalamin (vitamin B12) biosynthesis CbiM protein.
     
 0.792
Acid_6716
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV3608 putative ABC transporter ATP-binding protein.
  
 
  0.792
Acid_3459
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr1357 peptide ABC transporter ATP-binding protein.
    
  0.781
Acid_2139
KEGG: aba:Acid345_0807 hypothetical protein.
  
  
  0.768
Acid_2179
Hypothetical protein.
       0.768
Acid_2180
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mac:MA3655 UbiE/COQ5 methyltransferase.
       0.767
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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