Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_2181Signal transduction histidine kinase, LytS; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; KEGG: aba:Acid345_4032 periplasmic sensor signal transduction histidine kinase. (436 aa)    
Predicted Functional Partners:
Acid_1253
Transcriptional regulator, LytR/AlgR family; PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: aba:Acid345_1001 transcriptional regulator, LytR/AlgR family.
 
 0.982
Acid_6056
Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: tel:tll1367 two-component hybrid sensor and regulator.
 
    
 0.888
Acid_3290
Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: tel:tll1367 two-component hybrid sensor and regulator.
 
    
 0.873
Acid_2884
Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: tel:tll1367 two-component hybrid sensor and regulator.
 
    
 0.862
Acid_1058
Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: gsu:GSU1928 sensor histidine kinase/response regulator.
 
    
 0.853
Acid_2309
PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sru:SRU_0416 two-component system, regulatory protein.
 
 
 0.828
Acid_7003
PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: chy:CHY_0658 DNA-binding response regulator.
 
 
 0.828
Acid_1461
PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sru:SRU_2855 two-component system response regulator protein.
 
 
 0.827
Acid_2906
PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sru:SRU_2855 two-component system response regulator protein.
 
 
 0.827
Acid_4304
PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sru:SRU_2855 two-component system response regulator protein.
 
 
 0.827
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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