Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_2183PFAM: protein of unknown function DUF214; KEGG: gvi:gll1201 unknown protein. (827 aa)    
Predicted Functional Partners:
Acid_6482
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aba:Acid345_0366 secretion protein HlyD.
  
    0.810
Acid_6481
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0367 ABC transporter, ATPase subunit.
  
   0.767
Acid_4169
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: aba:Acid345_0375 periplasmic sensor signal transduction histidine kinase.
  
     0.734
Acid_6478
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0372 ABC transporter, ATPase subunit.
  
   0.706
Acid_2184
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vvy:VV2136 transcriptional activator MetR.
       0.562
Acid_7936
PFAM: secretion protein HlyD family protein; KEGG: aba:Acid345_3323 secretion protein HlyD.
  
    0.495
Acid_7937
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_3324 ABC transporter, ATPase subunit.
  
   0.472
Acid_2173
KEGG: ade:Adeh_3441 hypothetical protein.
  
     0.457
Acid_2268
PFAM: alpha/beta hydrolase fold; KEGG: gvi:gll0053 hypothetical protein.
  
     0.424
Acid_6486
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: gvi:gll0775 putative HlyD family secretion protein.
  
  0.407
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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