Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Acid_2200PFAM: DGPFAETKE family protein; KEGG: pae:PA1354 hypothetical protein. (139 aa)    
Predicted Functional Partners:
Acid_5297
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: rpc:RPC_4762 glyoxalase/bleomycin resistance protein/dioxygenase.
    0.936
Acid_5300
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Tetratricopeptide TPR_2 repeat protein; Sigma-70, region 4 type 2; KEGG: aba:Acid345_4453 putative sigma factor, ECF subfamily.
 
    0.795
Acid_2430
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: aba:Acid345_4314 putative sigma factor, ECF subfamily.
 
    0.786
Acid_3701
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: nfa:nfa13220 putative sigma factor.
 
    0.786
Acid_2429
PFAM: DGPFAETKE family protein; KEGG: aba:Acid345_4313 DGPFAETKE domain protein.
  
     0.769
Acid_3335
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rso:RSc0107 PhnB protein.
    0.683
Acid_2201
PFAM: PA14 domain protein; KEGG: bfr:BF1759 putative Icc family phosphohydrolase.
       0.588
Acid_3365
PFAM: protein of unknown function DUF899, thioredoxin family protein; KEGG: pol:Bpro_1368 protein of unknown function DUF899, thioredoxin-like.
 
    0.478
Acid_4609
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mca:MCA2808 hypothetical protein.
    0.470
Acid_2202
Hypothetical protein.
       0.437
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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