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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2201PFAM: PA14 domain protein; KEGG: bfr:BF1759 putative Icc family phosphohydrolase. (205 aa)    
Predicted Functional Partners:
Acid_5744
KEGG: rba:RB7502 hypothetical protein.
  
     0.729
Acid_2200
PFAM: DGPFAETKE family protein; KEGG: pae:PA1354 hypothetical protein.
       0.588
Acid_3772
Hypothetical protein; KEGG: aba:Acid345_3470 conserved hypothetical protein, putative thiol-disulfide isomerase or thioredoxin.
  
   0.582
Acid_2202
Hypothetical protein.
       0.560
Acid_0841
PFAM: Protein of unknown function DUF1587; Protein of unknown function DUF1588; Protein of unknown function DUF1592; Protein of unknown function DUF1595; KEGG: rba:RB11886 hypothetical protein-signal peptide and transmembrane prediction.
  
   0.533
Acid_5375
KEGG: aba:Acid345_3470 conserved hypothetical protein, putative thiol-disulfide isomerase or thioredoxin.
  
    0.494
Acid_5332
KEGG: rba:RB6629 hypothetical protein.
  
     0.481
Acid_3771
KEGG: aba:Acid345_3470 conserved hypothetical protein, putative thiol-disulfide isomerase or thioredoxin.
  
    0.480
Acid_2373
PFAM: Calcium-binding EF-hand-containing protein; KEGG: rba:RB8450 hypothetical protein.
  
    0.479
Acid_3633
KEGG: rba:RB8450 hypothetical protein.
  
    0.467
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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