STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2240PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aba:Acid345_2846 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (272 aa)    
Predicted Functional Partners:
Acid_2242
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aba:Acid345_2848 xylose isomerase-like TIM barrel.
 
     0.890
Acid_2241
PFAM: oxidoreductase domain protein; KEGG: aba:Acid345_2847 oxidoreductase.
 
    0.889
Acid_2246
PFAM: N-acetylneuraminic acid synthase, N-terminal domain; KEGG: aba:Acid345_2841 N-acetylneuraminate synthase.
 
  
 0.877
Acid_2243
PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: cvi:CV3889 acetolactate synthase.
  
 0.798
Acid_3654
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gvi:glr4355 probable oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.762
Acid_0776
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: cya:CYA_0936 oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.732
Acid_2244
KEGG: dde:Dde_2893 hypothetical protein.
   
 
 0.728
Acid_3629
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:bll0508 hypothetical oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.727
Acid_2245
TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: aba:Acid345_2842 phosphatase KdsC.
 
     0.701
Acid_3077
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KR; KEGG: aba:Acid345_0465 beta-ketoacyl synthase.
  
 
 0.685
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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