Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Acid_2255PFAM: amidohydrolase 2; KEGG: rba:RB4440 hypothetical protein. (315 aa)    
Predicted Functional Partners:
Acid_1511
PFAM: amidohydrolase 2; KEGG: atc:AGR_C_5105 conserved hypothetical protein.
  
  
 
0.928
Acid_0697
PFAM: amidohydrolase 2; KEGG: rba:RB9860 hypothetical protein.
  
  
 
0.927
Acid_2256
PFAM: aldo/keto reductase; KEGG: aba:Acid345_4508 aldo/keto reductase.
  
    0.767
Acid_5959
PFAM: protein of unknown function DUF718; KEGG: tac:Ta0744 conserved hypothetical protein.
 
   
 0.641
Acid_2254
Hypothetical protein.
       0.598
Acid_5349
KEGG: cpe:CPE1875 hypothetical protein.
  
     0.420
Acid_3901
KEGG: xcb:XC_2479 hypothetical protein.
  
     0.404
Acid_2801
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bja:bll2956 gluconolactonase.
 
     0.403
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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