STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2256PFAM: aldo/keto reductase; KEGG: aba:Acid345_4508 aldo/keto reductase. (319 aa)    
Predicted Functional Partners:
Acid_2255
PFAM: amidohydrolase 2; KEGG: rba:RB4440 hypothetical protein.
  
    0.768
Acid_0846
PFAM: aldo/keto reductase; KEGG: rpc:RPC_3195 aldo/keto reductase.
 
 
 0.698
Acid_2254
Hypothetical protein.
       0.590
Acid_4144
PFAM: aldo/keto reductase; KEGG: sme:SMc01702 putative oxidoreductase protein.
  
     0.574
Acid_6734
PFAM: aldo/keto reductase; KEGG: aba:Acid345_0299 aldo/keto reductase.
  
     0.536
Acid_1177
PFAM: deoxyhypusine synthase; KEGG: ava:Ava_1896 deoxyhypusine synthase-like protein.
  
 
   0.517
Acid_1937
PFAM: protein of unknown function DUF362; KEGG: mba:Mbar_A1540 hypothetical protein.
  
     0.484
Acid_0388
PFAM: protein of unknown function DUF362; KEGG: chy:CHY_1734 hypothetical protein.
  
     0.444
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.