STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2282PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ilo:IL2101 amidohydrolase family enzyme. (494 aa)    
Predicted Functional Partners:
Acid_1969
PFAM: amidohydrolase; KEGG: aba:Acid345_1826 amidohydrolase.
  
     0.766
Acid_5495
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mxa:MXAN_2375 amidohydrolase domain protein.
  
     0.761
Acid_4902
KEGG: sru:SRU_2428 hypothetical protein.
  
     0.747
Acid_0926
TIGRFAM: amidohydrolase; KEGG: ccr:CC1556 hypothetical protein.
 
     0.727
Acid_1120
PFAM: amidohydrolase; KEGG: gvi:gll3395 similar to Xaa-Pro dipeptidase.
  
     0.701
Acid_5787
PFAM: amidohydrolase; KEGG: bja:bll5570 hypothetical protein.
  
     0.693
Acid_2281
PFAM: MscS Mechanosensitive ion channel; KEGG: gvi:gll0937 hypothetical protein.
       0.682
Acid_2231
TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: eli:ELI_13895 hypothetical protein.
 
     0.640
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.621
hutH
KEGG: aba:Acid345_1410 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
  
  
 0.620
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.