Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Acid_2285PFAM: beta-lactamase; KEGG: aba:Acid345_1607 beta-lactamase. (281 aa)    
Predicted Functional Partners:
Acid_4936
PFAM: peptidase S45, penicillin amidase; KEGG: aba:Acid345_3370 penicillin amidase.
     
  0.900
Acid_5979
PFAM: peptidase S45, penicillin amidase; KEGG: oih:OB3304 penicillin acylase.
     
  0.900
Acid_2286
PFAM: phosphoesterase, PA-phosphatase related; KEGG: aba:Acid345_0313 phosphoesterase, PA-phosphatase related.
       0.773
Acid_2287
Hypothetical protein.
       0.727
Acid_2284
SMART: Tetratricopeptide domain protein; KEGG: gvi:gll2226 hypothetical protein.
       0.414
Acid_2130
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bur:Bcep18194_B1620 lipolytic enzyme.
 
      0.400
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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