Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_2298TIGRFAM: SpoIID/LytB domain; KEGG: aba:Acid345_0930 sporulation protein and related proteins. (480 aa)    
Predicted Functional Partners:
Acid_2297
PFAM: penicillin-binding protein, transpeptidase; KEGG: aba:Acid345_0931 penicillin-binding protein, transpeptidase.
     
 0.806
Acid_2296
PFAM: amino acid permease-associated region; KEGG: aba:Acid345_1536 amino acid transporter.
       0.773
Acid_4586
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: aba:Acid345_1153 N-acetylmuramoyl-L-alanine amidase.
 
  
 0.562
Acid_3567
PFAM: peptidase M23B; KEGG: aba:Acid345_4692 peptidase M23B.
 
   
 0.519
Acid_3049
PFAM: peptidase M23B; KEGG: gvi:gll2975 hypothetical protein.
 
   
 0.509
dacA
Protein of unknown function DUF147; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
  
   
 0.446
Acid_2295
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bcl:ABC3656 peptidase.
       0.442
Acid_2710
PFAM: Lytic transglycosylase, catalytic; KEGG: aba:Acid345_2691 lytic transglycosylase, catalytic.
 
    0.412
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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