STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2302PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: mmu:12971 crystallin, mu. (318 aa)    
Predicted Functional Partners:
Acid_5671
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: sme:SMb20433 putative cyclodeaminase protein.
  
  
 
0.929
Acid_2515
PFAM: aminotransferase, class V; KEGG: aba:Acid345_0127 alanine--glyoxylate transaminase.
    
 0.906
Acid_5309
TIGRFAM: alanine dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: chy:CHY_0666 alanine dehydrogenase.
    
  0.901
Acid_5426
PFAM: alanine dehydrogenase/PNT domain protein; KEGG: dvu:DVU0571 alanine dehydrogenase.
    
  0.901
Acid_7398
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.825
Acid_6579
PFAM: proline racemase; KEGG: xac:XAC2231 B-cell mitogen related protein.
 
   
 0.720
Acid_2300
PFAM: alpha-2-macroglobulin; alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: aba:Acid345_0928 alpha-2-macroglobulin-like.
     
 0.651
Acid_2299
KEGG: aba:Acid345_0929 hypothetical protein.
       0.642
Acid_2301
PFAM: protein of unknown function DUF1175; KEGG: aba:Acid345_0927 protein of unknown function DUF1175.
       0.642
Acid_2303
PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: mka:MK0486 ATPase of the AAA+ class.
       0.482
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.