STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2342PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ret:RHE_CH00772 putative methyltransferase protein. (333 aa)    
Predicted Functional Partners:
Acid_2343
KEGG: dsy:DSY3314 hypothetical protein.
       0.625
Acid_2344
KEGG: rme:Rmet_5242 hypothetical protein.
  
    0.622
Acid_2341
SMART: LamG domain protein jellyroll fold domain protein; KEGG: bur:Bcep18194_B1087 MotA/TolQ/ExbB proton channel.
       0.532
Acid_0999
KEGG: aba:Acid345_2538 kinase-like protein.
   
   0.497
Acid_0659
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rpa:RPA4056 hypothetical protein.
  
     0.455
Acid_6300
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gsu:GSU0630 hypothetical protein.
 
 
   0.407
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.