Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_2425PFAM: protein of unknown function DUF214; KEGG: aba:Acid345_3591 ABC efflux pump, inner membrane subunit. (852 aa)    
Predicted Functional Partners:
Acid_6482
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aba:Acid345_0366 secretion protein HlyD.
  
    0.785
Acid_7796
PFAM: protein of unknown function DUF214; KEGG: mxa:MXAN_1695 putative permease.
  
     0.745
Acid_3730
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_3344 von Willebrand factor, type A.
  
     0.668
Acid_4169
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: aba:Acid345_0375 periplasmic sensor signal transduction histidine kinase.
  
     0.659
Acid_6486
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: gvi:gll0775 putative HlyD family secretion protein.
  
  0.634
Acid_4564
Hypothetical protein; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.628
Acid_6485
Multidrug resistance efflux pump-like protein; KEGG: dvu:DVU2439 efflux transporter, RND family, MFP subunit.
  
  0.625
Acid_2823
KEGG: aba:Acid345_2156 amino acid transporters.
  
     0.620
Acid_6481
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0367 ABC transporter, ATPase subunit.
  
   0.618
Acid_6994
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.610
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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