STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2463Glucose/sorbosone dehydrogenase-like protein; KEGG: sth:STH2009 hypothetical protein. (604 aa)    
Predicted Functional Partners:
Acid_6398
PFAM: HNH endonuclease; KEGG: RGD1564952_predicted, LOC304761; similar to zinc finger, RAN-binding domain containing 3 (predicted).
  
    0.716
Acid_3161
PFAM: acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase; KEGG: rso:RSc1887 putative acyl coenzyme A thioester hydrolase protein.
  
    0.590
Acid_3791
PFAM: Collagen triple helix repeat; KEGG: gga:395488 macrophage receptor with collagenous structure.
  
     0.587
Acid_1883
PFAM: glucose sorbosone dehydrogenase; KEGG: nar:Saro_1838 glucose sorbosone dehydrogenase.
  
     0.519
Acid_4809
KEGG: ath:At5g03560 expressed protein.
  
     0.512
Acid_2464
PFAM: protein kinase; WD40 domain protein beta Propeller; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: aba:Acid345_0263 serine/threonine protein kinase.
       0.507
Acid_3142
PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: jan:Jann_3483 NADP oxidoreductase, coenzyme F420-dependent.
  
     0.475
Acid_6274
KEGG: sco:SCO6735 hypothetical protein.
  
     0.465
Acid_0820
hydroxyneurosporene-O-methyltransferase; PFAM: O-methyltransferase, family 2; KEGG: rba:RB1595 hydroxyindole O-methyltransferase.
  
     0.446
Acid_1971
KEGG: cef:CE2214 hypothetical protein.
  
     0.419
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.