STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2517PFAM: beta-lactamase domain protein; KEGG: ana:all1228 hypothetical protein. (285 aa)    
Predicted Functional Partners:
Acid_2516
KEGG: bbr:BB0483 hypothetical protein.
       0.564
Acid_3883
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ttj:TTHA1835 NADH oxidase.
   
 0.539
Acid_1005
PFAM: protein of unknown function UPF0227; KEGG: gvi:glr4247 hypothetical protein.
 
     0.521
Acid_2518
Hypothetical protein.
       0.471
Acid_2519
KEGG: lin:lin0153 hypothetical protein.
       0.471
Acid_1972
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; 2-nitropropane dioxygenase, NPD; KR; KEGG: fra:Francci3_0926 beta-ketoacyl synthase.
  
 
 0.459
Acid_6792
PFAM: Curculin domain protein (mannose-binding) lectin; KEGG: pfl:PFL_1229 putidacin L1.
 
    0.450
Acid_2577
KEGG: ana:alr3806 unknown protein.
  
     0.436
Acid_6415
KEGG: ava:Ava_0396 hypothetical protein.
  
     0.428
Acid_4499
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: syf:Synpcc7942_1826 mRNA-binding protein.
  
    0.426
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.