Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_2525TIGRFAM: YD repeat protein; KEGG: aba:Acid345_4251 YD repeat protein. (1248 aa)    
Predicted Functional Partners:
Acid_2526
SMART: Tetratricopeptide domain protein.
       0.773
Acid_6368
KEGG: bpa:BPP0665 hypothetical protein.
  
     0.614
Acid_4940
Hypothetical protein; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein.
  
     0.609
Acid_1756
PFAM: transcriptional regulator TrmB; KEGG: mma:MM0369 hypothetical protein.
  
     0.549
Acid_7603
PFAM: plasmid encoded RepA protein; KEGG: rme:Rmet_2825 plasmid encoded RepA protein.
  
     0.521
Acid_3072
KEGG: rba:RB4621 hypothetical protein-signal peptide prediction.
  
     0.505
Acid_4714
PFAM: Thioesterase; glycosyl transferase, group 1; KEGG: ava:Ava_4730 thioesterase.
  
     0.503
Acid_1229
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: psb:Psyr_4684 biotin synthesis protein BioC.
  
     0.474
Acid_3004
PFAM: TonB-dependent receptor; Cna B domain protein; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
    0.466
Acid_5361
SMART: AAA ATPase; KEGG: cef:CE2650 putative ABC transporter.
  
     0.465
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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