STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2568KEGG: aba:Acid345_1711 hypothetical protein. (427 aa)    
Predicted Functional Partners:
Acid_7293
KEGG: aba:Acid345_1711 hypothetical protein.
  
     0.775
Acid_6994
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.741
Acid_4564
Hypothetical protein; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.726
Acid_6153
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_0423 hypothetical protein.
  
     0.716
Acid_0857
KEGG: nar:Saro_0604 hypothetical protein.
  
     0.704
Acid_3730
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_3344 von Willebrand factor, type A.
  
     0.700
Acid_7376
Hypothetical protein; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.697
Acid_2567
KEGG: aba:Acid345_0663 TonB-dependent receptor.
 
     0.690
Acid_4916
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.680
Acid_3523
Hypothetical protein; KEGG: aba:Acid345_2388 Cna B-type protein.
  
     0.673
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.