STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2596KEGG: aba:Acid345_1624 hypothetical protein. (878 aa)    
Predicted Functional Partners:
Acid_1615
Hypothetical protein; KEGG: aba:Acid345_3021 glycosyl hydrolase, BNR repeat.
  
     0.775
Acid_2597
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: lac:LBA0663 putative transcriptional regulator.
       0.757
Acid_4922
PFAM: peptidase S45, penicillin amidase; KEGG: ccr:CC1122 penicillin amidase family protein.
  
     0.525
Acid_2598
[Acyl-carrier-protein] S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: gsu:GSU1602 malonyl CoA-acyl carrier protein transacylase.
       0.508
Acid_1640
PFAM: peptidase M14, carboxypeptidase A; KEGG: ccr:CC0985 hypothetical protein.
  
     0.486
Acid_2646
KEGG: aba:Acid345_3020 conserved hypothetical signal peptide protein.
  
     0.476
Acid_6585
KEGG: gvi:gll0760 hypothetical protein.
  
     0.464
Acid_6368
KEGG: bpa:BPP0665 hypothetical protein.
  
     0.461
Acid_5004
KEGG: gvi:gll0760 hypothetical protein.
  
     0.440
Acid_4902
KEGG: sru:SRU_2428 hypothetical protein.
  
     0.438
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.