Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_2602KEGG: aba:Acid345_2226 tetratricopeptide repeat protein. (286 aa)    
Predicted Functional Partners:
Acid_2603
KEGG: aba:Acid345_3839 tetratricopeptide repeat protein.
 
    
0.785
Acid_2173
KEGG: ade:Adeh_3441 hypothetical protein.
 
     0.679
Acid_5268
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sde:Sde_3070 hypothetical protein.
  
     0.675
Acid_2601
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: aba:Acid345_2172 transcriptional regulator, GntR family.
       0.555
Acid_6654
KEGG: aba:Acid345_0515 hypothetical protein.
  
     0.513
Acid_3447
KEGG: aba:Acid345_0515 hypothetical protein.
  
     0.511
Acid_5967
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pol:Bpro_3376 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
  
     0.509
Acid_3225
PFAM: TPR repeat-containing protein; transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_1052 serine/threonine protein kinase with TPR repeats.
 
  0.476
Acid_0584
TIGRFAM: conserved repeat domain; KEGG: cyb:CYB_1569 conserved repeat domain protein.
  
     0.471
Acid_7851
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_1052 serine/threonine protein kinase with TPR repeats.
 
 
   0.455
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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