STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2605PFAM: protein of unknown function DUF1080; KEGG: rba:RB1109 putative multi-domain protein. (280 aa)    
Predicted Functional Partners:
Acid_2604
KEGG: ccr:CC2023 hypothetical protein.
 
     0.805
Acid_2607
KEGG: bth:BT3585 putative oxidoreductase.
 
     0.800
Acid_2606
Cellulase; PFAM: glycoside hydrolase, family 9; glycoside hydrolase, family 9 domain protein Ig domain protein; KEGG: sde:Sde_0636 cellulase.
       0.773
Acid_2627
PFAM: protein of unknown function DUF1080; KEGG: sru:SRU_2533 probable secreted glycosyl hydrolase.
  
     0.773
Acid_5692
PFAM: protein of unknown function DUF1080; KEGG: sru:SRU_2533 probable secreted glycosyl hydrolase.
  
     0.773
Acid_0701
PFAM: protein of unknown function DUF1080; KEGG: rba:RB3944 hypothetical protein.
  
     0.771
Acid_6142
PFAM: protein of unknown function DUF1080; KEGG: rba:RB3635 probable secreted glycosyl hydrolase.
  
     0.766
Acid_3656
PFAM: protein of unknown function DUF1080; KEGG: rba:RB1854 hypothetical protein.
  
     0.755
Acid_7533
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB12073 hypothetical protein.
 
   
 0.750
Acid_5494
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB12073 hypothetical protein.
 
   
 0.744
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.