STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2660PFAM: glycoside hydrolase, family 3 domain protein; PA14 domain protein; KEGG: aba:Acid345_3246 beta-glucosidase. (850 aa)    
Predicted Functional Partners:
Acid_7605
PFAM: glycoside hydrolase, family 31; KEGG: aba:Acid345_0898 alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.938
Acid_3433
Hypothetical protein; KEGG: xac:XAC3313 alpha-glucosidase.
 
  
 0.937
Acid_4416
PFAM: glycoside hydrolase, family 31; KEGG: aba:Acid345_0650 alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.929
Acid_5006
PFAM: glycoside hydrolase, family 3 domain protein; KEGG: sma:SAV2708 putative glycosyl hydrolase; Belongs to the glycosyl hydrolase 3 family.
  
  
 
0.929
Acid_6936
PFAM: glycoside hydrolase, family 3 domain protein; KEGG: cps:CPS_3739 periplasmic beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
  
  
 
0.926
Acid_2679
PFAM: glycoside hydrolase, family 3 domain protein; KEGG: ccr:CC3054 xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 3 family.
  
  
 
0.922
Acid_2606
Cellulase; PFAM: glycoside hydrolase, family 9; glycoside hydrolase, family 9 domain protein Ig domain protein; KEGG: sde:Sde_0636 cellulase.
  
  
 0.919
Acid_2079
PFAM: Glycosyl hydrolase family 32, N terminal domain protein; SMART: glycoside hydrolase, family 32; KEGG: bld:BLi04178 hypothetical protein.
  
 
 0.916
Acid_2768
PFAM: glycoside hydrolase, family 1; KEGG: nar:Saro_0789 glycoside hydrolase, family 1; Belongs to the glycosyl hydrolase 1 family.
    
 0.912
Acid_3427
PFAM: glycoside hydrolase, family 5; KEGG: sde:Sde_1572 3-hydroxyacyl-CoA dehydrogenase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.905
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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