STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2678PFAM: ROK family protein; KEGG: gka:GK2422 transcriptional repressor of the xylose operon. (387 aa)    
Predicted Functional Partners:
Acid_2680
TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: xcv:XCV4363 glycoside-pentoside-hexuronide:cation symporter family protein.
 
   
 0.683
Acid_2679
PFAM: glycoside hydrolase, family 3 domain protein; KEGG: ccr:CC3054 xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 3 family.
     
 0.598
Acid_2681
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase, family 10; KEGG: sde:Sde_2633 endo-1,4-beta-xylanase.
       0.581
Acid_2677
KEGG: rba:RB7682 hypothetical protein.
     
 0.561
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.