STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2681Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase, family 10; KEGG: sde:Sde_2633 endo-1,4-beta-xylanase. (365 aa)    
Predicted Functional Partners:
Acid_1173
KEGG: aba:Acid345_2025 alpha/beta hydrolase.
 
     0.908
Acid_2680
TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: xcv:XCV4363 glycoside-pentoside-hexuronide:cation symporter family protein.
 
     0.880
Acid_2993
PFAM: glycoside hydrolase, family 43; KEGG: bfs:BF0575 putative glycosyl hydrolase/xylanase.
   
 0.834
Acid_2679
PFAM: glycoside hydrolase, family 3 domain protein; KEGG: ccr:CC3054 xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 3 family.
 
   
 0.811
Acid_0259
KEGG: tfu:Tfu_2984 hypothetical protein.
 
     0.805
Acid_2666
Alpha-glucuronidase; PFAM: glycoside hydrolase family 67; glycosyl hydrolase 67 C-teriminal domain protein; KEGG: aba:Acid345_0963 alpha-glucosiduronase; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.781
Acid_2103
PFAM: putative esterase; glycoside hydrolase, family 13 domain protein; KEGG: aba:Acid345_3245 putative esterase.
   0.777
Acid_2606
Cellulase; PFAM: glycoside hydrolase, family 9; glycoside hydrolase, family 9 domain protein Ig domain protein; KEGG: sde:Sde_0636 cellulase.
 
   
 0.747
Acid_4441
PFAM: glycoside hydrolase, family 43; KEGG: sco:SCO2427 secreted arabinase.
 
   
 0.741
Acid_7480
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: bth:BT4173 putative rhamnogalacturonan acetylesterase.
  
     0.734
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.