STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2695Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: aba:Acid345_3889 transcriptional repressor, CopY family. (131 aa)    
Predicted Functional Partners:
Acid_2694
PFAM: peptidase M56, BlaR1; KEGG: aba:Acid345_3888 peptidase M56, BlaR1.
 
    0.919
Acid_4816
TIGRFAM: TonB family protein; PFAM: peptidase M56, BlaR1; KEGG: sru:SRU_0297 peptidase, S41 family.
 
    0.751
Acid_4323
PFAM: peptidase M56, BlaR1; KEGG: aba:Acid345_3888 peptidase M56, BlaR1.
 
    0.737
Acid_4820
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: rba:RB7198 hypothetical protein.
  
     0.714
Acid_6348
PFAM: peptidase M56, BlaR1; KEGG: gvi:glr1077 unknown protein.
 
    0.710
Acid_1032
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; peptidase M56, BlaR1; KEGG: aba:Acid345_0148 TonB-like protein.
 
    0.684
Acid_4438
PFAM: peptidase M56, BlaR1; KEGG: aba:Acid345_3297 peptidase M56, BlaR1.
 
    0.682
Acid_0096
PFAM: peptidase M56, BlaR1; KEGG: gvi:glr1077 unknown protein.
 
    0.667
Acid_4819
TIGRFAM: TonB family protein; PFAM: peptidase M56, BlaR1; KEGG: rba:RB7200 probable penicillin resistance regulatory protein.
 
    0.653
Acid_5553
PFAM: peptidase M56, BlaR1; KEGG: aba:Acid345_0209 peptidase M56, BlaR1.
 
    0.605
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.