Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_2804KEGG: ana:all1887 hypothetical protein. (367 aa)    
Predicted Functional Partners:
Acid_2807
KEGG: aba:Acid345_4599 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase.
 
     0.789
asnS
TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: ava:Ava_3630 asparaginyl-tRNA synthetase.
       0.773
Acid_2806
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aba:Acid345_4598 xylose isomerase-like TIM barrel.
       0.732
Acid_2802
KEGG: gsu:GSU2816 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
       0.504
Acid_2803
PFAM: response regulator receiver; histidine kinase A domain protein domain protein; KEGG: syn:sll1672 two-component hybrid histidine kinase.
       0.504
Acid_3433
Hypothetical protein; KEGG: xac:XAC3313 alpha-glucosidase.
  
     0.462
Acid_3086
beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase, family 20; KEGG: aba:Acid345_3493 beta-N-acetylhexosaminidase.
     0.456
Acid_6569
beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase, family 20; KEGG: aba:Acid345_3493 beta-N-acetylhexosaminidase.
     0.451
Acid_2104
PFAM: protein of unknown function DUF303, acetylesterase putative; glycoside hydrolase family 2, sugar binding; KEGG: bth:BT4091 sialic acid-specific 9-O-acetylesterase.
  
     0.424
Acid_2797
PFAM: peptidase M28; KEGG: cps:CPS_2554 peptidase, M28 family.
  
     0.409
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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