STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2824PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: pcu:pc1783 probable isocitrate dehydrogenase (NADP). (490 aa)    
Predicted Functional Partners:
Acid_1291
Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
 
 0.953
Acid_7693
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: aba:Acid345_0598 pyruvate flavodoxin/ferredoxin oxidoreductase-like.
     
 0.909
Acid_7350
PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: aba:Acid345_4042 isocitrate dehydrogenase (NAD+).
  
  
 
0.908
Acid_6987
2-oxoglutarate ferredoxin oxidoreductase, delta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: aba:Acid345_1811 4Fe-4S ferredoxin, iron-sulfur binding.
     
 0.903
Acid_6988
2-oxoglutarate ferredoxin oxidoreductase, alpha subunit; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: aba:Acid345_1810 pyruvate flavodoxin/ferredoxin oxidoreductase-like.
     
 0.902
Acid_6989
2-oxoglutarate ferredoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: aba:Acid345_1809 thiamine pyrophosphate enzyme-like TPP-binding.
   
 
 0.902
Acid_6990
2-oxoglutarate ferredoxin oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: aba:Acid345_1808 2-oxoacid--acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate.
     
 0.902
Acid_7692
PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: aba:Acid345_0599 thiamine pyrophosphate enzyme-like TPP-binding.
   
 
 0.902
Acid_1872
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: aba:Acid345_0951 4Fe-4S ferredoxin, iron-sulfur binding.
     
  0.900
Acid_3816
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: aba:Acid345_3680 glutamate synthase (ferredoxin).
  
 
 0.896
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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