STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2862PFAM: protein of unknown function DUF214; KEGG: aba:Acid345_4414 ABC efflux pump, inner membrane subunit. (399 aa)    
Predicted Functional Partners:
Acid_7937
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_3324 ABC transporter, ATPase subunit.
 
   0.981
Acid_6481
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0367 ABC transporter, ATPase subunit.
 
   0.973
Acid_6478
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0372 ABC transporter, ATPase subunit.
 
   0.966
Acid_1657
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: noc:Noc_2214 ABC transporter, ATPase subunit.
 
   0.958
Acid_7921
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0970 ABC transporter, ATPase subunit.
 
   0.947
Acid_7101
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afu:AF1018 ABC transporter, ATP-binding protein.
 
   0.946
Acid_1833
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nmu:Nmul_A1972 ABC transporter related.
 
   0.938
lolD
ABC transporter related; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
   0.934
Acid_7936
PFAM: secretion protein HlyD family protein; KEGG: aba:Acid345_3323 secretion protein HlyD.
 
    0.795
Acid_7920
PFAM: protein of unknown function DUF214; KEGG: aba:Acid345_0559 ABC efflux pump, inner membrane subunit.
  
    0.783
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.