STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2866KEGG: aba:Acid345_4723 hypothetical protein. (258 aa)    
Predicted Functional Partners:
Acid_2867
Hypothetical protein.
       0.773
Acid_3723
KEGG: aba:Acid345_1594 hypothetical protein.
  
     0.642
Acid_4603
KEGG: aba:Acid345_1594 hypothetical protein.
  
     0.641
Acid_2865
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: ppr:PBPRB1531 hypothetical oxidoreductase, short-chain dehydrogenase/reductase family.
   
   0.581
Acid_2864
Glucokinase; PFAM: ROK family protein; KEGG: tma:TM1469 glucokinase.
       0.519
Acid_6506
KEGG: ade:Adeh_1237 hypothetical protein.
  
     0.486
Acid_5356
PFAM: OmpA/MotB domain protein; KEGG: tbd:Tbd_0244 probable outer membrane protein.
  
    0.480
Acid_3892
KEGG: rba:RB8171 hypothetical protein-transmembrane prediction.
  
     0.471
Acid_7288
PFAM: sugar transferase; KEGG: ade:Adeh_2455 undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.456
Acid_4305
KEGG: rba:RB8171 hypothetical protein-transmembrane prediction.
  
     0.452
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.