Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_2913KEGG: rfr:Rfer_2442 hypothetical protein. (357 aa)    
Predicted Functional Partners:
Acid_2912
PFAM: Carboxymuconolactone decarboxylase; Cupin domain protein; Cupin 2, conserved barrel domain protein; KEGG: rfr:Rfer_2441 carboxymuconolactone decarboxylase.
  
 0.959
Acid_2914
PFAM: dienelactone hydrolase; KEGG: ade:Adeh_3213 hypothetical protein.
 
 
 0.943
Acid_2910
KEGG: ade:Adeh_3220 hypothetical protein.
 
   
 0.881
Acid_2909
PFAM: aldo/keto reductase; KEGG: bja:bll5547 aldo-keto reductase.
 
 
   0.832
Acid_2915
PFAM: Carboxylesterase, type B; KEGG: nar:Saro_1730 carboxylesterase, type B; Belongs to the type-B carboxylesterase/lipase family.
 
    0.832
Acid_2911
PFAM: aldo/keto reductase; KEGG: bxe:Bxe_B1949 aldo/keto reductase.
 
 
   0.820
Acid_5307
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase, E1 component; catalytic domain of components of various dehydrogenase complexes; Transketolase, central region; KEGG: sru:SRU_1173 2-oxoglutarate dehydrogenase, E1 component.
   
 0.791
Acid_2937
Pyruvate dehydrogenase (acetyl-transferring); PFAM: Transketolase, central region; Transketolase domain protein; KEGG: sru:SRU_0576 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta subunit.
  
 0.759
Acid_3687
PFAM: dehydrogenase, E1 component; Transketolase, central region; Transketolase domain protein; KEGG: aba:Acid345_1786 dehydrogenase, E1 component.
  
 0.759
Acid_2908
PFAM: aldo/keto reductase; KEGG: ade:Adeh_3215 aldo/keto reductase.
 
 
   0.756
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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