STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2931KEGG: aba:Acid345_0817 Fe-S protein, radical SAM family. (328 aa)    
Predicted Functional Partners:
Acid_4473
PFAM: Radical SAM domain protein; KEGG: hal:VNG1185G PqqE.
  
     0.774
Acid_1366
PFAM: Radical SAM domain protein; KEGG: plt:Plut_1375 Fe-S oxidoreductase-like.
  
     0.767
Acid_6631
KEGG: aba:Acid345_0881 Fe-S protein, radical SAM family.
  
     0.728
Acid_2932
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: aba:Acid345_0362 transcriptional regulator, Crp/Fnr family.
  
  
 0.681
Acid_2359
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aba:Acid345_2766 Fe-S protein, radical SAM family.
  
     0.554
Acid_2929
PFAM: major facilitator superfamily MFS_1; KEGG: gka:GK0766 nitrate/nitrite transporter.
 
   
 0.524
Acid_2927
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tko:TK2077 4Fe-4S cluster-binding protein.
 
     0.504
Acid_5675
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aba:Acid345_2766 Fe-S protein, radical SAM family.
  
     0.493
Acid_2933
Hypothetical protein.
       0.488
Acid_2934
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: aba:Acid345_0547 hemerythrin HHE cation binding protein.
       0.488
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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