Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_2986Hypothetical protein; KEGG: rba:RB12305 similar to receptor protein kinase-like protein. (528 aa)    
Predicted Functional Partners:
Acid_7293
KEGG: aba:Acid345_1711 hypothetical protein.
  
     0.760
Acid_0884
KEGG: mlo:mlr2793 hypothetical protein.
  
     0.753
Acid_6386
PFAM: amidohydrolase 2; KEGG: aba:Acid345_0988 amidohydrolase 2.
  
     0.451
Acid_4605
PFAM: Cna B domain protein; KEGG: aba:Acid345_2674 hypothetical protein.
  
     0.435
Acid_5714
PFAM: TonB-dependent receptor; KEGG: aba:Acid345_1415 TonB-dependent receptor.
  
     0.422
Acid_1078
Oxidoreductase; KEGG: aba:Acid345_0781 oxidoreductase.
  
     0.413
Acid_2823
KEGG: aba:Acid345_2156 amino acid transporters.
  
     0.407
Acid_2984
Galactonate dehydratase; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: sco:SCO3475 putative galactonate dehydratase protein.
       0.407
Acid_2985
PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: sco:SCO3475 putative galactonate dehydratase protein.
       0.407
Acid_3925
Aminopeptidase; KEGG: hma:rrnAC2261 aminopeptidase.
  
     0.407
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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