Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_2995PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ana:alr0897 alcohol dehydrogenase. (389 aa)    
Predicted Functional Partners:
Acid_2996
PFAM: cyclase/dehydrase; KEGG: dge:Dgeo_0042 cyclase/dehydrase.
 
    0.939
Acid_6914
Catalase; PFAM: manganese containing catalase; KEGG: bja:bll3758 Mn-containing catalase.
 
  
 0.687
Acid_3008
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: atc:AGR_pAT_398 hypothetical oxidoreductase IN CITA-SSPB intergenic region.
  
    0.604
Acid_2997
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: aba:Acid345_0726 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.521
Acid_6921
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mlo:mll6858 short chain dehydrogenase.
  
    0.517
Acid_0230
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bja:bll3586 hypothetical protein.
     
  0.469
Acid_4276
Methyltransferase type 11; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: aba:Acid345_0672 putative RNA methylase.
     
  0.469
Acid_0349
UDP-galactopyranose mutase; PFAM: amine oxidase; KEGG: nmu:Nmul_A2150 amine oxidase.
 
    0.462
Acid_6666
KEGG: aba:Acid345_1069 outer membrane protein.
 
    0.408
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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