Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Acid_1825 | Acid_2999 | Acid_1825 | Acid_2999 | KEGG: pac:PPA0680 hypothetical protein. | KEGG: ret:RHE_PB00042 putative aminoacid/polyamine transporter, permease protein. | 0.495 |
Acid_2070 | Acid_2999 | Acid_2070 | Acid_2999 | KEGG: atc:AGR_pTi_251 sucrose phosphorylase SplA; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain. | KEGG: ret:RHE_PB00042 putative aminoacid/polyamine transporter, permease protein. | 0.528 |
Acid_2999 | Acid_1825 | Acid_2999 | Acid_1825 | KEGG: ret:RHE_PB00042 putative aminoacid/polyamine transporter, permease protein. | KEGG: pac:PPA0680 hypothetical protein. | 0.495 |
Acid_2999 | Acid_2070 | Acid_2999 | Acid_2070 | KEGG: ret:RHE_PB00042 putative aminoacid/polyamine transporter, permease protein. | KEGG: atc:AGR_pTi_251 sucrose phosphorylase SplA; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain. | 0.528 |
Acid_2999 | Acid_4507 | Acid_2999 | Acid_4507 | KEGG: ret:RHE_PB00042 putative aminoacid/polyamine transporter, permease protein. | PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: aba:Acid345_4079 alpha amylase. | 0.528 |
Acid_2999 | argR | Acid_2999 | Acid_2503 | KEGG: ret:RHE_PB00042 putative aminoacid/polyamine transporter, permease protein. | Transcriptional regulator, ArgR family; Regulates arginine biosynthesis genes. | 0.418 |
Acid_4507 | Acid_2999 | Acid_4507 | Acid_2999 | PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: aba:Acid345_4079 alpha amylase. | KEGG: ret:RHE_PB00042 putative aminoacid/polyamine transporter, permease protein. | 0.528 |
argR | Acid_2999 | Acid_2503 | Acid_2999 | Transcriptional regulator, ArgR family; Regulates arginine biosynthesis genes. | KEGG: ret:RHE_PB00042 putative aminoacid/polyamine transporter, permease protein. | 0.418 |