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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3000PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2696 ABC transporter, fused ATPase and inner membrane subunits. (592 aa)    
Predicted Functional Partners:
Acid_6320
PFAM: Heat shock protein 70; KEGG: tma:TM0373 dnaK protein.
  
 0.774
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.747
Acid_2303
PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: mka:MK0486 ATPase of the AAA+ class.
  
 
  0.736
Acid_2479
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_3570 ABC transporter, ATPase subunit.
  
  0.704
Acid_0581
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_2891 ABC transporter, ATPase subunit.
 
     0.689
thrS
Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
 
 
 0.649
Acid_1657
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: noc:Noc_2214 ABC transporter, ATPase subunit.
 
     0.638
Acid_5434
Tungstate/molybdate transport system ATP-binding protein; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ade:Adeh_0998 molybdate ABC transporter, ATPase subunit.
  
    0.629
rplN
LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
     0.613
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
  
   0.611
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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