Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acid_3003TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; KEGG: gka:GK3193 hypothetical protein. (180 aa)    
Predicted Functional Partners:
Acid_3002
KEGG: cel:K08D12.6 Hypothetical protein K08D12.6.
       0.762
Acid_3004
PFAM: TonB-dependent receptor; Cna B domain protein; KEGG: aba:Acid345_0663 TonB-dependent receptor.
     
 0.599
Acid_3001
Hypothetical protein.
       0.513
Acid_3005
PFAM: Inorganic pyrophosphatase; KEGG: mka:MK1450 inorganic pyrophosphatase.
       0.499
Acid_5743
PFAM: von Willebrand factor, type A; KEGG: rba:RB7503 conserved hypothetical protein, putative chloride channel.
  
  
 0.432
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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